Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902519.1_cds_XP_016452557.1_46788
CDS Infomation

[gene=LOC107777091] [db_xref=GeneID:107777091] [protein=vam6/Vps39-like protein] [protein_id=XP_016452557.1] [location=complement(join(89539..89739,90007..90105,90953..91402,91909..92151,92471..92692,92885..93214,93851..94277,96198..96310,97203..97346,97461..97592,97960..98171,98968..99409))] [gbkey=CDS]
Sequence

ATGGTGCACAGCGCCTACGATTCCTTTGAACTCCTCAATAATTGTCCCACAAAAATCGAT
GCCATCGAATCATACGGCTCAAATTTGCTCATCGCCTGTTCCGATGGATCGCTCCGCGTT
TACGGTCCGGAATCCGCGGTTTCCGATCAATCTCCGCCGTCCGATTTCCACTCCCAAACC
TTAGGGCTTCATCAAGAGCGGTACGTGCTTGAAAGAAGTGTGAATGGATTCTCCAGAAGA
CAAATGCTGGCTATGGAAGTTCTCGTATCGCGAGAACTTCTGCTTTCTCTCTCGGAGTCC
ATAGCGTTCCATCGGTTGCCCAATTTGGAGACTTTGGCTGTGATAACTAAGGCTAAAGGT
GCAAATGTATACTCATGGGATGATAAAAGAGGGTTTCTTTGCTTCGGTAGGCAAAAGAGA
GTTTGTATTTTCAGACATGACGGGGGAAGGGGATTTGTGGAGGTGAAAGAATTCGGAGTC
CCTGACACAGTCAAGTCGATGTCATGGTGTGGTGAGAATATTTGCTTGGGGATTAGAAGA
GAGTACATGATATTGAATACCACCAATGGTGCATTGTCTGAGGTGTTTCCTTCAGGGAGG
ATCGCCCCACCTCTTGTGGTGTCTCTTCCCTCAGGAGAACTTCTTTTGGGAAAGGATAAT
ATTGGTGTCTTAGTTGACCAAAATGGCAAGTTGATTCAAGAGGGGAGGGTTTGTTGGTCT
GAGGCTCCTGCAGCTGTTGTTATTCAGAATCCCTATGCAATAGGTCTCTTACCACGGCAT
GTTGAGATACGTTCTCTTCGTGTTCCTTATCCTTTAATTCAAACAGTTGTCCTTCGGAAT
GTTCGCCGTGTTGTTCGAAGCAACAATGCTGTTATTGTTGCTCTTGATTATTCTGTTTTT
GGCTTTTTTCCTGTTCCTCTAGGTGCACAGATTGTACAACTAACAGCATCTGGAAACTTT
GAGGAAGCCTTGGCTTTGTGCAAATTGCTACCGCCAGAAGATTCAAGTCTTAGAACTGCA
AAGGAGCAATCGATTCATATAAGATATGCGCACTTTCTATTTGAAAATGGGAGCTATGAA
GAGGCAATGGAACATTTTCTGGCATCTCAAGTAGAAATCACTTATGTGCTCGCCTTATAT
CCATCAATTATTGTTCCGAAATCATCTTTCATACCTGAACCACAGAAATTTGTTGATGTC
GCGGATGCACCATATCTCTCCCGAGGTTCCTCTGGTCTATCAGATGATTTGGAGTCGACG
CCTTCGAATGTCTTAGAATCTGATGAAATGGATATAGAATCCAAGAAAATGAGTCATAAC
ACTTTGATGGGTCTGATTAAGTATTTGCAGAAGAAGAGATATAGTGTCATTGAGAAAGCC
ACAGCTGAGGGAACTGAGGAGGTGGTTTCAGATGCTGTAGGAGATAATTTCATTTCCTAT
GGAACTAGCCGGTCCAAGAAACCAACCAAGGGAAGAACCCATGCTCCAATCACTTCGGTC
GCTAGGGATATGGCTGCAATTCTGGACACTGCACTTCTTCAAGCTCTACTTTTAACTGGA
CAGTCCTCAGCTGCTACAGATTTTCTGAAAGCCCTCAACTATTGTGATGTGAAAATATGC
CAGGAGTTCCTGCAGAAAAGAATCCAGTATGCTTGTCTGCTAGAACTTTATAGAAGCAAC
TCAATGCATCGTGAAGCACTGAAACTTCTCCATCAATTGGTAGAAGAGTGCAAGTCAGAG
CAAATTCCTGTAGAGCTTTCAACGAAATTCAAGCCTGATATGATCATTGAATATCTCAAA
CCCCTTTGTGCAACAGACCCCATGCTTGTCCTGGAGTTCTCACTGCCTGTTCTTGAAAGT
TGTCCTATGCAAACCATTGAGCTATTCTTGTCTGGTAACATTCCAGCAGACTTGGTGAAC
TCTTACTTAAAACAGCATGCTCCAAACATGCAGGCGACATATCTGGAACTCATGCTTGCC
ATGAATGAAAATAGCATCTCCAGGAATCTGCAGAATGAAATGGTGCAAATTTATCTCTCT
GAAGTTCTTGATTTGTATGCTGAACTTAATACCCAGCAAAAGTGGGATGAGAAAACATAT
TCTCCGACAAGGAAAAAGCTATTGTCTGCTTTGGAGAGTATCTCTGGATATAACCCAGAG
GTGCTGCTGAAGAGACTTCCACCAGATGCTTTGTATGAAGAACGTGCAGTTCTGTTGGGG
AAAATGAATCAACATGAACTTGCTTTGTCTATTTATGTGCACAAGCTTCACGTTCCTGAA
CTTGCACTGTCCTATTGTGATCGGGTGTATGATTCAGGACTTCAACAACATTCAGCAAAA
TCATATGGAAACATTTACCTGACTCTACTGCAAATCTATCTAAATCCTACGAAGACAACG
AAAAATTTTGAGAAGAAAATTACTAATCTGGTATCATCTCAGAGCCCTGGGATTCCAAAA
GTTGGTTCAGGAACTACAGCAAAGATAAAAGGAGGCCGCTCCAAGAAAATTGCTGAAATT
GAGGGCGCCGAGGACATTCGATTCAGTCCAAGTGGCACTGACAGTGGTAGGAGTGATGGA
GATATGGAAGATGCTGCTGAGGAAGGAGATTCTACTATTATGCTAGATCAAGTTCTTGAT
CTTTTGAGCAGAAGGTGGGATCGGATCCATGGGGCCCAAGCTCTGAAACTACTGCCAAGG
GATACGAAGCTACAGAATTTGCTTCCATTTCTTGGACCTCTTCTGAGGAAATCCAGTGAA
GCGTATCGGAACTTTTCAGTGATTAAAAGCTTGAGAGAAAGTGAAAACCTACAGGTCAAA
GATGAGCTGTACAACCAAAGAAAAGCAGTCTTGAAGATCACAAGTGATAGCTTGTGTTCT
CTTTGCAACAAGAAGATCGGGACCAGTGTCTTTGCAGTCTATCCTAATGGTAAGACAATT
GTGCACTTTGTTTGCTTTAGAGATTCACAGAATATGAAGGCAGTTGGAAGAGGCTCTCAG
TTGAGGAAAAGATGA

Peptide Sequence

PEP ID

XP_016452557.1
PEP Infomation

PREDICTED: vam6/Vps39-like protein [Nicotiana tabacum]
Sequence

MVHSAYDSFELLNNCPTKIDAIESYGSNLLIACSDGSLRVYGPESAVSDQSPPSDFHSQT
LGLHQERYVLERSVNGFSRRQMLAMEVLVSRELLLSLSESIAFHRLPNLETLAVITKAKG
ANVYSWDDKRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDTVKSMSWCGENICLGIRR
EYMILNTTNGALSEVFPSGRIAPPLVVSLPSGELLLGKDNIGVLVDQNGKLIQEGRVCWS
EAPAAVVIQNPYAIGLLPRHVEIRSLRVPYPLIQTVVLRNVRRVVRSNNAVIVALDYSVF
GFFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRTAKEQSIHIRYAHFLFENGSYE
EAMEHFLASQVEITYVLALYPSIIVPKSSFIPEPQKFVDVADAPYLSRGSSGLSDDLEST
PSNVLESDEMDIESKKMSHNTLMGLIKYLQKKRYSVIEKATAEGTEEVVSDAVGDNFISY
GTSRSKKPTKGRTHAPITSVARDMAAILDTALLQALLLTGQSSAATDFLKALNYCDVKIC
QEFLQKRIQYACLLELYRSNSMHREALKLLHQLVEECKSEQIPVELSTKFKPDMIIEYLK
PLCATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPNMQATYLELMLA
MNENSISRNLQNEMVQIYLSEVLDLYAELNTQQKWDEKTYSPTRKKLLSALESISGYNPE
VLLKRLPPDALYEERAVLLGKMNQHELALSIYVHKLHVPELALSYCDRVYDSGLQQHSAK
SYGNIYLTLLQIYLNPTKTTKNFEKKITNLVSSQSPGIPKVGSGTTAKIKGGRSKKIAEI
EGAEDIRFSPSGTDSGRSDGDMEDAAEEGDSTIMLDQVLDLLSRRWDRIHGAQALKLLPR
DTKLQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKDELYNQRKAVLKITSDSLCS
LCNKKIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQLRKR

Transcript Sequence

Gene sequence data has not been registered.